Bioconductor Dispersion estimates

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deseq2 HERVs low counts prefiltering dispersion estimates

updated 5.9 years ago by Michael Love 42k • written 6.0 years ago by rodrigo.duarte88 ▴ 40

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Hello, Did you ever manage to figure this out?

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Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

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Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

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And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

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